""" Utilties function. """ import numpy as np import json, math, time, os import matplotlib matplotlib.use('Agg') #https://stackoverflow.com/questions/4706451/how-to-save-a-figure-remotely-with-pylab import matplotlib.pyplot as plt import copy import gc import torch import torch.nn.functional as F import time from nets.LeNet import * from nets.wideresnet import * from nets.wideresnet_cifar import * import nets.resnet_abn as resnet_abn import nets.resnet_deconv as resnet_DC from efficientnet_pytorch import EfficientNet from efficientnet_pytorch.utils import url_map as EfficientNet_map import torchvision.models as models def load_model(model, num_classes, pretrained=False): if model in models.resnet.__all__ : model_name = model #'resnet18' #'resnet34' #'wide_resnet50_2' if pretrained : print("Using pretrained weights") model = getattr(models.resnet, model_name)(pretrained=True) num_ftrs = model.fc.in_features model.fc = nn.Linear(num_ftrs, num_classes) else: model = getattr(models.resnet, model_name)(pretrained=False, num_classes=num_classes) elif model in models.vgg.__all__ : model_name = model #'vgg11', 'vgg1_bn' if pretrained : print("Using pretrained weights") model = getattr(models.vgg, model_name)(pretrained=True) num_ftrs = model.classifier[-1].in_features model.classifier[-1] = nn.Linear(num_ftrs, num_classes) else : model = getattr(models.vgg, model_name)(pretrained=False, num_classes=num_classes) elif model in models.densenet.__all__ : model_name = model #'densenet121' #'densenet201' if pretrained : print("Using pretrained weights") model = getattr(models.densenet, model_name)(pretrained=True) num_ftrs = model.classifier.in_features model.classifier = nn.Linear(num_ftrs, num_classes) else: model = getattr(models.densenet, model_name)(pretrained=False, num_classes=num_classes) elif model == 'LeNet': if pretrained : print("Pretrained weights not available") model = LeNet(3,num_classes) model_name=str(model) elif model == 'WideResNet': if pretrained : print("Pretrained weights not available") # model = WideResNet(28, 10, dropout_rate=0.0, num_classes=num_classes) # model = WideResNet(16, 4, dropout_rate=0.0, num_classes=num_classes) model = wide_resnet_cifar(26, 10, num_classes=num_classes) # model = wide_resnet_cifar(20, 10, num_classes=num_classes) model_name=str(model) elif model in EfficientNet_map.keys(): model_name=model # efficientnet-b0 , efficientnet-b1, efficientnet-b4 if pretrained: #ImageNet ou Advprop (Meilleurs perf normalement mais normalisation differentes) print("Using pretrained weights") model = EfficientNet.from_pretrained(model_name, advprop=False) else: model = EfficientNet.from_name(model_name) elif model in resnet_abn.__all__ : if pretrained : print("Pretrained weights not available") model_name=model model = getattr(resnet_abn, model_name)(pretrained=False, num_classes=num_classes) elif model in resnet_DC.__all__: if pretrained : print("Pretrained weights not available") model_name = model model = getattr(resnet_DC, model_name)(num_classes=num_classes) else: raise Exception('Unknown model') return model, model_name class ConfusionMatrix(object): """ Confusion matrix. Helps computing the confusion matrix and F1 scores. Example use :: confmat = ConfusionMatrix(...) confmat.reset() for data in dataset: ... confmat.update(...) confmat.f1_metric(...) Attributes: num_classes (int): Number of classes. mat (Tensor): Confusion matrix. Filled by update method. """ def __init__(self, num_classes): """ Initialize ConfusionMatrix. Args: num_classes (int): Number of classes. """ self.num_classes = num_classes self.mat = None def update(self, target, pred): """ Update the confusion matrix. Args: target (Tensor): Target labels. pred (Tensor): Prediction. """ n = self.num_classes if self.mat is None: self.mat = torch.zeros((n, n), dtype=torch.int64, device=target.device) with torch.no_grad(): k = (target >= 0) & (target < n) inds = n * target[k].to(torch.int64) + pred[k] self.mat += torch.bincount(inds, minlength=n**2).reshape(n, n) def reset(self): """ Reset the Confusion matrix. """ if self.mat is not None: self.mat.zero_() def f1_metric(self, average=None): """ Compute the F1 score. Inspired from : https://scikit-learn.org/stable/modules/generated/sklearn.metrics.f1_score.html https://discuss.pytorch.org/t/how-to-get-the-sensitivity-and-specificity-of-a-dataset/39373/6 Args: average (str): Type of averaging performed on the data. (Default: None) ``None``: The scores for each class are returned. ``'micro'``: Calculate metrics globally by counting the total true positives, false negatives and false positives. ``'macro'``: Calculate metrics for each label, and find their unweighted mean. This does not take label imbalance into account. Return: Tensor containing the F1 score. It's shape is either 1, if there was averaging, or (num_classes). """ h = self.mat.float() TP = torch.diag(h) TN = [] FP = [] FN = [] for c in range(self.num_classes): idx = torch.ones(self.num_classes).bool() idx[c] = 0 # all non-class samples classified as non-class TN.append(self.mat[idx.nonzero()[:, None], idx.nonzero()].sum()) #conf_matrix[idx[:, None], idx].sum() - conf_matrix[idx, c].sum() # all non-class samples classified as class FP.append(self.mat[idx, c].sum()) # all class samples not classified as class FN.append(self.mat[c, idx].sum()) #print('Class {}\nTP {}, TN {}, FP {}, FN {}'.format(c, TP[c], TN[c], FP[c], FN[c])) tp = (TP/h.sum(1))#.sum() tn = (torch.tensor(TN, device=h.device, dtype=torch.float)/h.sum(1))#.sum() fp = (torch.tensor(FP, device=h.device, dtype=torch.float)/h.sum(1))#.sum() fn = (torch.tensor(FN, device=h.device, dtype=torch.float)/h.sum(1))#.sum() if average=="micro": tp, tn, fp, fn = tp.sum(), tn.sum(), fp.sum(), fn.sum() epsilon = 1e-7 precision = tp / (tp + fp + epsilon) recall = tp / (tp + fn + epsilon) f1 = 2* (precision*recall) / (precision + recall + epsilon) if average=="macro": f1=f1.mean() return f1 #from torchviz import make_dot def print_graph(PyTorch_obj=torch.randn(1, 3, 32, 32), fig_name='graph'): """Save the computational graph. Args: PyTorch_obj (Tensor): End of the graph. Commonly, the loss tensor to get the whole graph. fig_name (string): Relative path where to save the graph. (default: graph) """ graph=make_dot(PyTorch_obj) graph.format = 'png' #https://graphviz.readthedocs.io/en/stable/manual.html#formats graph.render(fig_name) def plot_resV2(log, fig_name='res', param_names=None, f1=True): """Save a visual graph of the logs. Args: log (dict): Logs of the training generated by most of train_utils. fig_name (string): Relative path where to save the graph. (default: res) param_names (list): Labels for the parameters. (default: None) f1 (bool): Wether to plot F1 scores. (default: True) """ epochs = [x["epoch"] for x in log] fig, ax = plt.subplots(nrows=2, ncols=3, figsize=(30, 15)) ax[0, 0].set_title('Loss') ax[0, 0].plot(epochs,[x["train_loss"] for x in log], label='Train') ax[0, 0].plot(epochs,[x["val_loss"] for x in log], label='Val') ax[0, 0].legend() ax[1, 0].set_title('Test') ax[1, 0].plot(epochs,[x["acc"] for x in log], label='Acc') if f1 and "f1" in log[0].keys(): #ax[1, 0].plot(epochs,[x["f1"]*100 for x in log], label='F1') #''' #print(log[0]["f1"]) if isinstance(log[0]["f1"], list): if len(log[0]["f1"])>10: print("Plotting results : Too many class for F1, plotting only min/max") ax[1, 0].plot(epochs,[max(x["f1"])*100 for x in log], label='F1-Max', ls='--') ax[1, 0].plot(epochs,[min(x["f1"])*100 for x in log], label='F1-Min', ls='--') else: for c in range(len(log[0]["f1"])): ax[1, 0].plot(epochs,[x["f1"][c]*100 for x in log], label='F1-'+str(c), ls='--') else: ax[1, 0].plot(epochs,[x["f1"]*100 for x in log], label='F1', ls='--') #''' ax[1, 0].legend() if log[0]["param"]!= None: if not param_names : param_names = ['P'+str(idx) for idx, _ in enumerate(log[0]["param"])] #proba=[[x["param"][idx] for x in log] for idx, _ in enumerate(log[0]["param"])] proba=[[x["param"][idx]['p'] for x in log] for idx, _ in enumerate(log[0]["param"])] mag=[[x["param"][idx]['m'] for x in log] for idx, _ in enumerate(log[0]["param"])] ax[0, 1].set_title('Prob =f(epoch)') ax[0, 1].stackplot(epochs, proba, labels=param_names) #ax[0, 1].legend(param_names, loc='center left', bbox_to_anchor=(1, 0.5)) ax[1, 1].set_title('Prob =f(TF)') mean = np.mean(proba, axis=1) std = np.std(proba, axis=1) ax[1, 1].bar(param_names, mean, yerr=std) plt.sca(ax[1, 1]), plt.xticks(rotation=90) ax[0, 2].set_title('Mag =f(epoch)') ax[0, 2].stackplot(epochs, mag, labels=param_names) #ax[0, 2].plot(epochs, np.array(mag).T, label=param_names) ax[0, 2].legend(param_names, loc='center left', bbox_to_anchor=(1, 0.5)) ax[1, 2].set_title('Mag =f(TF)') mean = np.mean(mag, axis=1) std = np.std(mag, axis=1) ax[1, 2].bar(param_names, mean, yerr=std) plt.sca(ax[1, 2]), plt.xticks(rotation=90) fig_name = fig_name.replace('.',',').replace(',,/','../') plt.savefig(fig_name, bbox_inches='tight') plt.close() def plot_compare(filenames, fig_name='res'): """Save a visual graph comparing trainings stats. Args: filenames (list[Strings]): Relative paths to the logs (JSON files). fig_name (string): Relative path where to save the graph. (default: res) """ all_data=[] legend="" for idx, file in enumerate(filenames): legend+=str(idx)+'-'+file+'\n' with open(file) as json_file: data = json.load(json_file) all_data.append(data) fig, ax = plt.subplots(ncols=3, figsize=(30, 8)) for data_idx, log in enumerate(all_data): log=log['Log'] epochs = [x["epoch"] for x in log] ax[0].plot(epochs,[x["train_loss"] for x in log], label=str(data_idx)+'-Train') ax[0].plot(epochs,[x["val_loss"] for x in log], label=str(data_idx)+'-Val') ax[1].plot(epochs,[x["acc"] for x in log], label=str(data_idx)) #ax[1].text(x=0.5,y=0,s=str(data_idx)+'-'+filenames[data_idx], transform=ax[1].transAxes) if log[0]["param"]!= None: if isinstance(log[0]["param"],float): ax[2].plot(epochs,[x["param"] for x in log], label=str(data_idx)+'-Mag') else : for idx, _ in enumerate(log[0]["param"]): ax[2].plot(epochs,[x["param"][idx] for x in log], label=str(data_idx)+'-P'+str(idx)) fig.suptitle(legend) ax[0].set_title('Loss') ax[1].set_title('Acc') ax[2].set_title('Param') for a in ax: a.legend() fig_name = fig_name.replace('.',',') plt.savefig(fig_name, bbox_inches='tight') plt.close() def viz_sample_data(imgs, labels, fig_name='data_sample', weight_labels=None): """Save data samples. Args: imgs (Tensor): Batch of image to sample from. Intended to contain at least 25 images. labels (Tensor): Labels of the images. fig_name (string): Relative path where to save the graph. (default: data_sample) weight_labels (Tensor): Weights associated to each labels. (default: None) """ sample = imgs[0:25,].permute(0, 2, 3, 1).squeeze().cpu() plt.figure(figsize=(10,10)) for i in range(25): plt.subplot(5,5,i+1) #Trop de figure cree ? plt.xticks([]) plt.yticks([]) plt.grid(False) plt.imshow(sample[i,].detach().numpy(), cmap=plt.cm.binary) label = str(labels[i].item()) if torch.is_tensor(weight_labels): label+= (" - p %.2f" % weight_labels[i].item()) plt.xlabel(label) plt.savefig(fig_name) print("Sample saved :", fig_name) plt.close('all') def print_torch_mem(add_info=''): """Print informations on PyTorch memory usage. Args: add_info (string): Prefix added before the print. (default: None) """ nb=0 max_size=0 for obj in gc.get_objects(): #print(type(obj)) try: if torch.is_tensor(obj) or (hasattr(obj, 'data') and torch.is_tensor(obj.data)): # and len(obj.size())>1: #print(i, type(obj), obj.size()) size = np.sum(obj.size()) if(size>max_size): max_size=size nb+=1 except: pass print(add_info, "-Pytroch tensor nb:",nb," / Max dim:", max_size) #print(add_info, "-Garbage size :",len(gc.garbage)) """Simple GPU memory report.""" mega_bytes = 1024.0 * 1024.0 string = add_info + ' memory (MB)' string += ' | allocated: {}'.format( torch.cuda.memory_allocated() / mega_bytes) string += ' | max allocated: {}'.format( torch.cuda.max_memory_allocated() / mega_bytes) string += ' | cached: {}'.format(torch.cuda.memory_cached() / mega_bytes) string += ' | max cached: {}'.format( torch.cuda.max_memory_cached()/ mega_bytes) print(string) ''' def plot_TF_influence(log, fig_name='TF_influence', param_names=None): proba=[[x["param"][idx]['p'] for x in log] for idx, _ in enumerate(log[0]["param"])] mag=[[x["param"][idx]['m'] for x in log] for idx, _ in enumerate(log[0]["param"])] plt.figure() mean = np.mean(proba, axis=1)*np.mean(mag, axis=1) #Pourrait etre interessant de multiplier avant le mean std = np.std(proba, axis=1)*np.std(mag, axis=1) plt.bar(param_names, mean, yerr=std) plt.xticks(rotation=90) fig_name = fig_name.replace('.',',') plt.savefig(fig_name, bbox_inches='tight') plt.close() ''' from torch._six import inf def clip_norm(tensors, max_norm, norm_type=2): """Clips norm of passed tensors. The norm is computed over all tensors together, as if they were concatenated into a single vector. Clipped tensors are returned. See: https://github.com/facebookresearch/higher/issues/18 Args: tensors (Iterable[Tensor]): an iterable of Tensors or a single Tensor to be normalized. max_norm (float or int): max norm of the gradients norm_type (float or int): type of the used p-norm. Can be ``'inf'`` for infinity norm. Returns: Clipped (List[Tensor]) tensors. """ if isinstance(tensors, torch.Tensor): tensors = [tensors] tensors = list(tensors) max_norm = float(max_norm) norm_type = float(norm_type) if norm_type == inf: total_norm = max(t.abs().max() for t in tensors) else: total_norm = 0 for t in tensors: if t is None: continue param_norm = t.norm(norm_type) total_norm += param_norm.item() ** norm_type total_norm = total_norm ** (1. / norm_type) clip_coef = max_norm / (total_norm + 1e-6) if clip_coef >= 1: return tensors #return [t.mul(clip_coef) for t in tensors] return [t if t is None else t.mul(clip_coef) for t in tensors]